mcp-server

BioMCP: Streamline Medical Models

Get a biomedical model context protocol for clinical trials and genomics. For founders in medical AI and bioinformatics.

From the repo · “BioMCP: Biomedical Model Context Protocol”

intermediate⏱ 1-2 hours💵 Free + LLM API costs
662 stars+8★ this week119 forksRustGuide quality 8/10 · reviewed Jul 2Updated 10/21/2026100% free · open source
What it is

Get a biomedical model context protocol for clinical trials and genomics by using BioMCP.

Real use case example

"A founder of a biotech startup uses BioMCP to develop a data model for analyzing patient genomics. She creates a custom model by following the protocol and then integrates it with her existing research tools. She's able to quickly analyze large datasets and make new discoveries."

Best insideClaude DesktopCursor
When to use it
  • •When designing clinical trials that require standardized data integration
  • •When developing genomics-based applications that need to interact with diverse data sources
  • •When creating biomedical models that require a common context for data interpretation
Ready-to-paste prompt
curl -X POST -H 'Content-Type: application/json' -d '{"model": "example_model", "context": {"patient_id": "example_patient"}}' http://localhost:8080/mcp
Heads up: Ensure you have Rust and Cargo installed on your system, as BioMCP is built using Rust and relies on the Cargo package manager
Saves to your device
Use with Claude
New

Skip the builder — one click puts this in Claude, Cursor, Antigravity and more.

⚡ Runs out of the box

A prompt/skill package — nothing to install beyond adding it to your AI tool.

Try it instantly — no install
Claude Code
mkdir -p ~/.claude/skills/biomcp && curl -fsSL https://workflowstacks.com/api/skills/biomcp/claude-skill -o ~/.claude/skills/biomcp/SKILL.md
Open in another AI app

Opens the app with this repo with the prompt ready to go — no copy-paste needed.

Connect the whole catalog (MCP)
claude mcp add --transport http workflowstacks https://workflowstacks.com/api/mcp

Adds a WorkflowStacks connector to Claude Code: search and load any skill here by chatting.

How BioMCP: Streamline Medical Models works
Codeflow
Free to inspect

BioMCP: Streamline Medical Models is a very large Rust project (~266k lines across 692 code files, plus 536 test files). You install it into your AI tool with one command; there is nothing to run yourself. Last commit this month, MIT license, has a test suite.

Size
Very large codebase
~266k lines · 692 code files · days to read — use, don't read
Setup
Install as a skill / plugin
Add it to Claude Code (or your AI tool) with one command — 2 skills inside. Nothing to run yourself.
Runs on
Inside your AI tool
Helper scripts use Rust · Python · Docker
Rust 77%Python 21%Shell 1%Jinja 1%
Where to start reading
  1. 1
    README.md
    Start here — what it does and how to install it
  2. 2
    AGENTS.md
    The instructions the AI actually follows
  3. 3
    manifest.json
    Where the program starts running
  4. 4
    src/main.rs
    Inside src/ — the main logic begins here
  5. 5
    examples/README.md
    A worked example — copy this to get going
What's in each folder
src/Core code — the actual logic790 files
skills/Prompts, skills & agent definitions48 files
bin/Command-line entry points1 files
docs/Documentation148 files
templates/Templates34 files
examples/Examples you can copy20 files
sdlc/Folder2159 files
testdata/Folder532 files
READMEHas testsDocumentedCI checksDocker readyExamples includedMIT licenseUpdated this month
Quick Actions
Details
Creator
genomoncology
Language
Rust
Category
mcp-server
Published
4/1/2025

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Featured on WorkflowStacks
[![Featured on WorkflowStacks](https://workflowstacks.com/api/badge/biomcp.svg)](https://workflowstacks.com/skills/biomcp?utm_source=github&utm_medium=badge)
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